Strain typing The phylogenetic group of the ESBL-producing E. coli was determined by a multiplex PCR assay . Isolates belonging to phylogenetic group B2 were screened with a Selleck Doramapimod previously established PCR-based method to identify the O25b subtype . Furthermore, multilocus sequence typing (MLST) using the scheme of the Institut Pasteur, Paris, France (http://www.pasteur.fr/mlst) was used to confirm that CTX-M-15-producing E. coli O25b belonged to the international clone ST131 . Genetic relatedness of the ESBL-producing strains was studied by PFGE following extraction of genomic DNA and digestion with XbaI PFGE according to a standard protocol using a GenePath system (Bio-Rad). PFGE banding profiles were compared digitally using Fingerprint II software (Bio-Rad) and relatedness was calculated using the unweighted pair group method with arithmetic KPT-330 ic50 mean (UPGMA) algorithm with similarity of bands using the Dice similarity indices. Isolates were considered to belong to the same PFGE cluster if their Dice similarity
index was >80% . Transfer of ESBL resistance determinants and plasmid analysis Transfer of ESBL encoding genes by conjugation was performed by matting-out assays using E. coli J53-2 RifR or E. coli HB101 StrR as recipient strains. Transconjugants were selected Fedratinib molecular weight on MH agar containing rifampin (250 μg/mL) or streptomycin (50 μg/mL) plus ceftazidime or cefotaxime (2 μg/ml). When plasmids were not transferable by conjugation, a transformation experiment was assayed. Plasmid DNA obtained using the QIAprep Spin Miniprep kit (Qiagen) were electroporated into E. coli DH10B (Invitrogen). Transformants were selected on MH agar plates supplemented with ceftazidime (2 μg/mL) or cefotaxime (2 μg/mL). Plasmids were classified according to their incompatibility group using the PCR replicon-typing scheme described previously . Detection of virulence factors and plasmid addiction systems For the ESBL-producing C-X-C chemokine receptor type 7 (CXCR-7) isolates, 17 virulence-associated genes were sought as previously described: fimH (type 1 fimbriae), papG (P fimbriae adhesion) alleles I, II and III, papC, sfa/focDE (S and F1C
fimbriae), afa/draBC (Dr-binding adhesions), iha (adhesion siderophore), hra (heat(resistant agglutinin), iutA (aerobactin receptor), fyuA (yersiniabcatin receptor), cnf-1 (cytotoxic necrotizing factor type 1), hlyA (α-hemolysin), sat (secreted autoreceptor toxin), kpsMT II (group II capsule), traT (serum resistance-associated) and pheR (phenylalanine tRNA, site of insertion from PAI V) . For E. coli recipient strains, seven plasmid addiction system PemK–PemI (plasmid emergency maintenance), CcdA–CcdB (coupled cell division locus) RelB–RelE (relaxed control of stable RNA synthesis), ParD–ParE (DNA replication), VagC-VagD (virulence-associated protein), Hok–Sok (host-killing) and PndA–PndC (promotion of nucleic acid) were sought by PCR as described previously .